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Structure factors have been supplied for datablock(s) KL_05_019
THIS REPORT IS FOR GUIDANCE ONLY. IF USED AS PART OF A REVIEW PROCEDURE FOR PUBLICATION, IT SHOULD NOT REPLACE THE EXPERTISE OF AN EXPERIENCED CRYSTALLOGRAPHIC REFEREE.
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Structure factor report
Datablock: KL_05_019
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Bond precision:
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C-C = 0.0421 A
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Wavelength=0.71073
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Cell:
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a=35.375(3)
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b=35.375(3)
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c=59.078(7)
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alpha=90
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beta=90
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gamma=120
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Temperature:
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100 K
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Calculated
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Reported
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Volume
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64025(13)
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64025(13)
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Space group
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R -3
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R -3 :H
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Hall group
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-R 3
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-R 3
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Moiety formula
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2(C234 H144 Cu12 N24 O96), 3(C16 H11 N) [+ solvent]
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2(C234 H144 Cu12 N24 O96), 3(C16 H11 N)
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Sum formula
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C516 H321 Cu24 N51 O192 [+ solvent]
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C516 H321 Cu24 N51 O192
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Mr
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11832.43
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11832.18
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Dx,g cm-3
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0.921
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0.921
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Z
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3
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3
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Mu (mm-1)
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0.645
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0.645
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F000
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18018.0
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18018.0
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F000'
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18049.98
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h,k,lmax
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29,29,49
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28,28,42
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Nref
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8584
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4829
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Tmin,Tmax
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0.891,0.914
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0.535,0.745
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Tmin'
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0.891
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Correction method= # Reported T Limits: Tmin=0.535 Tmax=0.745 AbsCorr = MULTI-SCAN
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Data completeness= 0.563
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Theta(max)= 17.181
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R(reflections)= 0.2126( 3036)
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wR2(reflections)= 0.4386( 4829)
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The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
THETM01_ALERT_3_A The value of sine(theta_max)/wavelength is less than 0.550
Calculated sin(theta_max)/wavelength = 0.4156
PLAT023_ALERT_3_A Resolution (too) Low [sin(theta)/Lambda < 0.6].. 0.42 Ang-1
PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full value Low . 0.563 Why?
PLAT082_ALERT_2_A High R1 Value .................................. 0.21 Report
PLAT088_ALERT_3_A Poor Data / Parameter Ratio .................... 4.09 Note
Alert level B
PLAT084_ALERT_3_B High wR2 Value (i.e. > 0.25) ................... 0.44 Report
PLAT242_ALERT_2_B Low MainResAtom Ueq as Compared to Neighbours N4 Check
PLAT260_ALERT_2_B Large Average Ueq of Residue Including N11 0.567 Check
PLAT341_ALERT_3_B Low Bond Precision on C-C Bonds ............... 0.04208 Ang.
PLAT369_ALERT_2_B Long C(sp2)-C(sp2) Bond C17 - C18 . 1.58 Ang.
PLAT420_ALERT_2_B D-H Bond Without Acceptor O18 --H18A . Please Check
PLAT911_ALERT_3_B Missing FCF Refl Between Thmin & STh/L= 0.416 3490 Report
0 3 0, -1 5 0, -5 7 0, -4 8 0, -1 8 0, -10 11 0,
-20 22 0, -2 22 0, -22 23 0, -19 23 0, -4 23 0, -1 23 0,
-18 24 0, -15 24 0, -3 24 0, 0 24 0, -23 25 0, -17 25 0,
-14 25 0, -11 25 0, -5 25 0, -2 25 0, -22 26 0, -19 26 0,
-13 26 0, -4 26 0, -21 27 0, -18 27 0, -15 27 0, -12 27 0,
( 3460 More NOT listed: see .ckf listing file)
Alert level C
RINTA01_ALERT_3_C The value of Rint is greater than 0.12
Rint given 0.147
PLAT020_ALERT_3_C The Reported Value of Rint is Greater Than 0.12 0.147 Report
PLAT160_ALERT_4_C max(sig)/min(sig) ratio x,y,z > 3 for N1 13.75 Check
PLAT220_ALERT_2_C NonSolvent Resd 1 O Ueq(max)/Ueq(min) Range 4.1 Ratio
PLAT220_ALERT_2_C NonSolvent Resd 2 O Ueq(max)/Ueq(min) Range 3.3 Ratio
PLAT241_ALERT_2_C High MainResAtom Ueq as Compared to Neighbours C46 Check
PLAT242_ALERT_2_C Low MainResAtom Ueq as Compared to Neighbours N3 Check
PLAT260_ALERT_2_C Large Average Ueq of Residue Including Cu1 0.143 Check
PLAT260_ALERT_2_C Large Average Ueq of Residue Including Cu3 0.210 Check
PLAT309_ALERT_2_C Single Bonded Oxygen (C-O > 1.3 Ang) ........... O21 Check
PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C41 - C42 . 1.56 Ang.
PLAT372_ALERT_2_C Short C(sp)-C(sp) Bond C8 - C16 . 1.08 Ang.
PLAT413_ALERT_2_C Short Inter XH3 .. XHn H14 ..H54B . 2.09 Ang.
x,y,z = 1_555 Check
PLAT420_ALERT_2_C D-H Bond Without Acceptor N11 --H11A . Please Check
PLAT420_ALERT_2_C D-H Bond Without Acceptor N11 --H11B . Please Check
PLAT722_ALERT_1_C Angle Calc 122(9), Rep 120.00 Dev... 2.00 Degree
C86 -C87 -C88 1_555 1_555 1_555 # 390 Check
PLAT722_ALERT_1_C Angle Calc 118(9), Rep 120.00 Dev... 2.00 Degree
C89 -C88 -C87 1_555 1_555 1_555 # 393 Check
PLAT906_ALERT_3_C Large K Value in the Analysis of Variance ...... 7.940 Check
PLAT918_ALERT_3_C Reflection(s) with I(obs) much Smaller I(calc) . 6 Check
0 2 1, -11 9 1, -5 4 3, -11 9 4, -3 6 12, 0 4 14,
PLAT976_ALERT_2_C Check Calcd Resid. Dens. 1.09Ang From O13 . -0.55 eA-3
PLAT977_ALERT_2_C Check Negative Difference Density on H50E . -0.33 eA-3
Alert level G
PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 139 Note
PLAT003_ALERT_2_G Number of Uiso or U(i,j) Restrained non-H-Atoms 143 Report
PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 6 Report
H18A H18B H19A H19B H11A H11B
PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large 9999.00 Why ?
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for N2 7.16 Check
And 36 other PLAT160 Alerts
More ...PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O21 7.27 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O22 6.67 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for N3 6.36 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for N4 7.00 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C55 8.00 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C56 8.89 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C57 8.75 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C58 7.78 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C59 7.27 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C60 7.78 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C61 7.27 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C62 7.00 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C63 7.27 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C64 6.36 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C65 8.75 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C66 10.00 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O27 3.58 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O28 3.34 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for N9 4.55 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O30 3.33 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for N10 7.59 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for O32 5.01 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C67 4.18 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C68 4.55 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C69 4.55 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C70 4.18 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C71 4.55 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C72 3.85 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C73 4.55 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C74 4.18 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C75 3.58 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C76 4.77 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C77 4.77 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C78 4.77 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C79 3.33 Check
PLAT160_ALERT_4_G max(sig)/min(sig) ratio x,y,z > 3 for C84 3.75 Check
PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 9 Report
PLAT174_ALERT_4_G The CIF-Embedded .res File Contains FLAT Records 12 Report
PLAT175_ALERT_4_G The CIF-Embedded .res File Contains SAME Records 14 Report
PLAT176_ALERT_4_G The CIF-Embedded .res File Contains SADI Records 2 Report
PLAT177_ALERT_4_G The CIF-Embedded .res File Contains DELU Records 1 Report
PLAT178_ALERT_4_G The CIF-Embedded .res File Contains SIMU Records 5 Report
PLAT186_ALERT_4_G The CIF-Embedded .res File Contains ISOR Records 1 Report
PLAT188_ALERT_3_G A Non-default SIMU Restraint Value has been used 0.0100 Report
PLAT189_ALERT_3_G A Non-default SAME Restraint Value for First Par 0.0050 Report
PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0050 Report
PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0050 Report
PLAT192_ALERT_3_G A Non-default DELU Restraint Value for First Par 0.0050 Report
PLAT299_ALERT_4_G Atom Site Occupancy Constrained at ............. 0.5 Check
N7 N7B C49 C49B C50 C50B C51 C51B
H49 H49B H50A H50B H50C H50D H50E H50F
H51A H51B H51C H51D H51E H51F N11 C79
C80 C81 C82 C83 C84 C85 C86 C87
C88 C89 C90 C91 C92 C93 C94 H11A
H11B H80 H82 H87 H88 H89 H91 H92
H93 H94
PLAT301_ALERT_3_G Main Residue Disorder ..............(Resd 1) 7% Note
PLAT302_ALERT_4_G Anion/Solvent/Minor-Residue Disorder (Resd 3) 100% Note
PLAT343_ALERT_2_G Unusual sp? Angle Range in Main Residue for C32 Check
PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C4 - C8 . 1.46 Ang.
PLAT380_ALERT_4_G Incorrectly? Oriented X(sp2)-Methyl Moiety ..... C50 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O6 ..C88 . 2.97 Ang.
1-x,1-y,-z = 10_665 Check
And 6 other PLAT432 Alerts
More ...PLAT432_ALERT_2_G Short Inter X...Y Contact O23 ..C86 . 2.75 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O23 ..C87 . 2.96 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O23 ..C85 . 3.01 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O24 ..C89 . 2.85 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O24 ..C88 . 2.85 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O26 ..C54 . 2.99 Ang.
4/3-y,2/3+x-y,-1/3+z = 8_654 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact O29 ..C50B . 2.59 Ang.
2/3-x+y,4/3-x,1/3+z = 6_565 Check
And 15 other PLAT432 Alerts
More ...PLAT432_ALERT_2_G Short Inter X...Y Contact N3 ..C89 . 2.94 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact N3 ..C88 . 3.02 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact N3 ..C90 . 3.02 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C29 ..C49 . 3.06 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C56 ..C94 . 3.11 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C57 ..C94 . 3.08 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C60 ..C93 . 2.94 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C61 ..C93 . 2.84 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C61 ..C90 . 2.97 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C61 ..C89 . 3.08 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C62 ..C90 . 2.81 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C62 ..C93 . 3.08 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C62 ..C89 . 3.16 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C62 ..C85 . 3.16 Ang.
x,y,z = 1_555 Check
PLAT432_ALERT_2_G Short Inter X...Y Contact C64 ..C80 . 3.09 Ang.
1-x,1-y,-z = 10_665 Check
PLAT606_ALERT_4_G Solvent Accessible VOID(S) in Crystal Structure ! Info
PLAT721_ALERT_1_G Bond Calc 0.92000, Rep 0.95000 Dev... 0.03 Ang.
C88 -H88 1_555 1_555 ........ # 223 Check
PLAT721_ALERT_1_G Bond Calc 0.93000, Rep 0.95000 Dev... 0.02 Ang.
C91 -H91 1_555 1_555 ........ # 228 Check
PLAT722_ALERT_1_G Angle Calc 111.00, Rep 109.50 Dev... 1.50 Degree
N7 -C51 -H51B 1_555 1_555 1_555 # 172 Check
And 4 other PLAT722 Alerts
More ...PLAT722_ALERT_1_G Angle Calc 108.00, Rep 109.50 Dev... 1.50 Degree
H51A -C51 -H51C 1_555 1_555 1_555 # 175 Check
PLAT722_ALERT_1_G Angle Calc 118.00, Rep 120.00 Dev... 2.00 Degree
C86 -C87 -H87 1_555 1_555 1_555 # 391 Check
PLAT722_ALERT_1_G Angle Calc 122.00, Rep 120.00 Dev... 2.00 Degree
C89 -C88 -H88 1_555 1_555 1_555 # 394 Check
PLAT722_ALERT_1_G Angle Calc 118.00, Rep 120.10 Dev... 2.10 Degree
C91 -C92 -H92 1_555 1_555 1_555 # 407 Check
PLAT760_ALERT_1_G CIF Contains no Torsion Angles ................. ? Info
PLAT789_ALERT_4_G Atoms with Negative _atom_site_disorder_group # 28 Check
PLAT802_ALERT_4_G CIF Input Record(s) with more than 80 Characters 1 Info
PLAT822_ALERT_4_G CIF-embedded .res Contains Negative PART Numbers 1 Check
PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 2384 Note
PLAT869_ALERT_4_G ALERTS Related to the Use of SQUEEZE Suppressed ! Info
PLAT909_ALERT_3_G Percentage of I>2sig(I) Data at Theta(Max) Still 100% Note
PLAT910_ALERT_3_G Missing FCF Reflection(s) Below Theta(Min)[Deg]= 1.37 Note
-1 2 0, -1 1 1, 0 1 2, 0 0 3,
PLAT913_ALERT_3_G Missing # of Very Strong Reflections in FCF .... 1 Note
1 3 4,
PLAT933_ALERT_2_G Number of HKL-OMIT Records in Embedded .res File 50 Note
-3 4 2, 1 5 2, -7 4 4, -3 3 12, -1 8 0, -1 5 0,
-8 5 2, -4 8 6, -7 9 8, 0 9 3, 3 3 6, -5 4 6,
-6 9 3, 1 6 4, -5 7 0, 2 4 10, -2 5 8, -6 4 2,
-10 8 6, 1 5 8, 0 0 6, 1 9 4, 3 6 6, -3 7 8,
-1 6 2, -3 5 4, -5 3 10, -3 2 4, -10 11 0, -7 4 10,
2 10 10, -4 8 0, 1 3 4, -2 8 8, 0 0 18, 0 3 0,
-2 6 4, 0 3 12, -14 9 10, 0 1 8, -2 17 8, -10 8 3,
3 5 1, -2 8 2, 3 4 8, -1 10 4, -2 2 2, -2 5 2,
-7 10 1, -5 5 2,
PLAT952_ALERT_5_G Calculated (ThMax) and CIF-Reported Lmax Differ 7 Units
PLAT958_ALERT_1_G Calculated (ThMax) and Actual (FCF) Lmax Differ 7 Units
PLAT969_ALERT_5_G The 'Henn et al.' R-Factor-gap value ........... 8.149 Note
Predicted wR2: Based on SigI**2 5.38 or SHELX Weight 31.09 Note
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 0 Info
5 ALERT level A = Most likely a serious problem - resolve or explain
10 ALERT level B = A potentially serious problem, consider carefully
31 ALERT level C = Check. Ensure it is not caused by an omission or oversight
111 ALERT level G = General information/check it is not something unexpected
11 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
64 ALERT type 2 Indicator that the structure model may be wrong or deficient
21 ALERT type 3 Indicator that the structure quality may be low
58 ALERT type 4 Improvement, methodology, query or suggestion
3 ALERT type 5 Informative message, check
|
Publication of your CIF
You should attempt to resolve as many as possible of the
alerts in all categories. Often the minor alerts point to easily fixed
oversights, errors and omissions in your CIF or refinement strategy, so
attention to these fine details can be worthwhile. In order to resolve some
of the more serious problems it may be necessary to carry out additional
measurements or structure refinements. However, the nature of your study may
justify the reported deviations from journal submission requirements
and the more serious of these should be commented upon in the discussion or experimental
section of a paper or in the "special_details" fields of the CIF.
checkCIF was carefully designed to identify outliers and unusual
parameters, but every test has its limitations and alerts that are not
important in a particular case may appear. Conversely, the absence of
alerts does not guarantee there are no aspects of the results needing
attention. It is up to the individual to critically assess their own
results and, if necessary, seek expert advice.
If level A alerts remain, which you believe to be justified deviations, and
you intend to submit this CIF for publication in a journal,
you should additionally insert an explanation in your CIF using the
Validation Reply Form (VRF) below. This will allow your explanation to be considered
as part of the review process.
|
Validation response formPlease find below a validation response form (VRF) that can be filled in and pasted into your CIF.
# start Validation Reply Form
_vrf_THETM01_KL_05_019
;
PROBLEM: The value of sine(theta_max)/wavelength is less than 0.550
RESPONSE: ...
;
_vrf_PLAT023_KL_05_019
;
PROBLEM: Resolution (too) Low [sin(theta)/Lambda < 0.6].. 0.42 Ang-1
RESPONSE: ...
;
_vrf_PLAT029_KL_05_019
;
PROBLEM: _diffrn_measured_fraction_theta_full value Low . 0.563 Why?
RESPONSE: ...
;
_vrf_PLAT082_KL_05_019
;
PROBLEM: High R1 Value .................................. 0.21 Report
RESPONSE: ...
;
_vrf_PLAT088_KL_05_019
;
PROBLEM: Poor Data / Parameter Ratio .................... 4.09 Note
RESPONSE: ...
;
# end Validation Reply Form
|
If you wish to submit your CIF for publication in Acta
Crystallographica Section C or E, you should upload your CIF via
the web.
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you should upload your CIF via
the web.
If your CIF is to form part of a submission to another
IUCr journal, you will be asked, either during electronic submission or
by the Co-editor handling your paper, to upload your CIF via our web site.
|
PLATON version of 23/04/2026; check.def file version of 30/03/2026
| Datablock KL_05_019 - ellipsoid plot |
|
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